WashU Virus Genome Browser
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Contents:
Navigating the WashU Virus Genome Browser
SNV track
SNV2 track
Public Data Hubs
Contact Us
Cite Us
WashU Virus Genome Browser
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Welcome to WashU Virus Genome Browser’s documentation!
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Welcome to WashU Virus Genome Browser’s documentation!
¶
Contents:
Navigating the WashU Virus Genome Browser
Virus Browser Home Page
Genomic Track View
Tracks
Apps
Settings
Help
Phylogenetic Tree View
Coloring Tree by Metadata
Identifying Strains of Interest
SNV track
Understanding the SNV track
Density mode and the “zoomed-out” view
Full mode and the “zoomed-in” view
Nomenclature:
Color code:
Behind the SNV track: the “pairwise” format
Uploading interface
The pairwise format
To generate the pairwise format
Batch alignment from FASTA to pairwise format
Batch upload as json files
Upload json-formatted datahub
SNV2 track
Functionality of SNV2 tracks
Defining the format of SNV2
Scripts for generating snv2 tracks
Public Data Hubs
Loading in a public data hub
Introducing currently available public data hubs (As of May 24, 2020)
NCBI database
Nextstrain database
GISAID database
Diagnostics
Putative SARS-CoV-2 Immune Epitopes
Recombination Events
Viral RNA modifications
Viral RNA expression
SARS-CoV-2 host transcriptional responses database
Contact Us
Cite Us
Indices and tables
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Index
Module Index
Search Page
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